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windows file protection


I hava a Linux's program , when I compiled it successfully on Cygwin
environment(cygwin1.dll   1.5.5-1 newest ) . The program uses
ipc-daemon2.exe for IPC.

When I run it on Windows. Sometime Windows event syslogs tell me that:
            windows file protection( tahoma.ttf, resrcmon.exe msxmlr.dll
etc).

It means that the system files have been replaced or modified. and I dont
know why I have such errors.

Anyone have exprimented such thing
  . Any ideas is welcome!!!

thanks



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